PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G204700.1.p
Common NameSETIT_006371mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 459aa    MW: 49581.3 Da    PI: 8.4669
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G204700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-18105154155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Seita.4G204700.1.p 105 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 154
                         78*******************......55************************997 PP

2AP241.72.9e-13197247155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  Seita.4G204700.1.p 197 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAQAYDKAAIKCYG 247
                         789*******.7******77733....25**********77**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-16105163IPR016177DNA-binding domain
PfamPF008479.0E-10105154IPR001471AP2/ERF domain
PROSITE profilePS5103217.754106162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17106162IPR001471AP2/ERF domain
SMARTSM003801.3E-31106168IPR001471AP2/ERF domain
CDDcd000184.51E-24197257No hitNo description
PfamPF008475.3E-9197247IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-17197255IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-17198255IPR001471AP2/ERF domain
PROSITE profilePS5103215.843198255IPR001471AP2/ERF domain
SMARTSM003801.1E-34198261IPR001471AP2/ERF domain
PRINTSPR003674.2E-6199210IPR001471AP2/ERF domain
PRINTSPR003674.2E-6237257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAATKRSFHG VVVDGIARAV AEEELQVNRR PEEGANRMIF GFPVPGAPTR PAAAVTQQFF  60
PATVAAAAPP AQATELCHVA APSAADQWAR SASRKSRRGP RSRSSQYRGV TFYRRTGRWE  120
SHIWDCGKQV YLGGFDTAQA AARAYDQAAI KFRGVNADIN FTLSDYKDEI KKMKNFSKEE  180
FVQVLRRQGA GFVRGSSRFR GVTQHKCGKW EARIGQLMGK KYVYLGLYDT EMEAAQAYDK  240
AAIKCYGKEA VTNFEPQTYD EELQVQPWDG ELDLELSLGC AGSDPSAAAA AAAVEVFTTA  300
PSRQRTMTLT LDLPEEDNET GAAADPGRCF RTRRPSPTPG TFRLLLADDD HVCHPGTGSR  360
DDNDTLHMLQ MGQVGSSGGG GGAAAAAGAH MRWPNGGNNW APPYATARAG PDTDDADAAA  420
AASSGFPLGR CSRCPRRPGG PATAEQPPVH QHKQQWWR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU414660.0U41466.1 Zea mays Glossy15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965778.10.0PREDICTED: uncharacterized protein LOC101769206
SwissprotP479274e-86AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLK3XWR30.0K3XWR3_SETIT; Uncharacterized protein
STRINGSi006371m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-84AP2 family protein